PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009131969.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 159aa    MW: 17017.9 Da    PI: 10.4065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009131969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001880102123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  XP_009131969.1  80 HPCPICGVEFPMGQALGGHMRRH 102
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-634102No hitNo description
PfamPF139122.2E-113560IPR007087Zinc finger, C2H2
SMARTSM003552.63658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.8713663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PROSITE profilePS501579.26580107IPR007087Zinc finger, C2H2
SMARTSM003550.07980102IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-1180103IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MVAISEINPT VEAKAANCLM LLSRVGQKGG DQKRVFTCKT CLKEFHSFQA LGGHRASHKK  60
PNNNESLSGL VKKAKAPSSH PCPICGVEFP MGQALGGHMR RHRNEIGGGA ALVTRALLPE  120
PTMTTLKKSS SGKRVACLDL SLGMVENLNL KLELGRTVC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1666211e-122DQ166621.1 Brassica carinata C2H2 zinc finger protein 1 (ZF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131969.11e-113PREDICTED: zinc finger protein ZAT12-like
RefseqXP_009131970.11e-113PREDICTED: zinc finger protein ZAT12-like
RefseqXP_013680546.11e-113PREDICTED: zinc finger protein ZAT12-like
RefseqXP_013715806.11e-113PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424103e-94ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLA0A078DJC81e-113A0A078DJC8_BRANA; BnaA03g09250D protein
TrEMBLM4CR501e-113M4CR50_BRARP; Uncharacterized protein
STRINGBra006691.1-P1e-113(Brassica rapa)
STRINGBra006692.1-P1e-113(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-95C2H2 family protein